AI-Prostate Cancer… Automated mPCa lesion segmentation with self-configuring nnU-Net framework 26 Sep 202524 Oct 2025 An automated segmentation framework based on deep learning for metastatic prostate cancer (mPCa) lesions in whole-body [68Ga]Ga-PSMA-11 PET/CT images for the purpose of extracting patient-level prognostic biomarkers. AI-tool features Disease…
free (w/ or w/o commercial version)… SlicerOpenDose3d 19 May 202519 May 2025 A Slicer3D extension module performing full 3D dosimetry for molecular radiotherapy procedures using multiple time point 3D datasets, either SPECT/CT or PET/CT. SlicerOpenDose3D is an OpenDose software project implementing a…
AI-segmentation… TMTV-Net: Fully Automated Total Metabolic Tumor Volume Segmentation in Lymphoma PET/CT 16 Jan 202524 Oct 2025 Task: TMTV-Net, is specifically designed to automate TMTV segmentation from PET/CT scans. TMTV-Net demonstrates robust performance and adaptability in TMTV segmentation across diverse multi-site external datasets, encompassing various lymphoma subtypes.…
AI-segmentation… SEQUOIA 8 Dec 202424 Oct 2025 automated multiclass SEgmentation, QUantification, and visualizatiOn of the dIseased Aorta on hybrid PET/CT SEQUOIA is an automated pipeline for aortic PET/CT studies. First, it segments the ascending aorta, aortic arch,…
AI-segmentation… NanoMASK: Nanomedicine Multi-modal AI-based Segmentation for PharmacoKinetics 18 Sep 202424 Oct 2025 Task: Automatic organ and tumor segmentation for nanomedicine pharmacokinetic studies. Description: NanoMASK model is a 3D U-Net adapted deep learning tool capable of rapid, automatic organ segmentation of multimodal imaging…
AI-NeuroImaging… JuST_BrainPET: Juelich Segmentation Tool for Amino Acid PET Brain Tumor Segmentation 12 Aug 202424 Oct 2025 Task: Automated Brain Tumor Detection and Segmentation for Treatment Response Assessment Using Amino Acid PET Description: JuST_BrainPET: Juelich Segmentation Tool for Brain Tumor PET is a model trained for metabolic…
AI-lung cancer… A Bayesian approach to tissue-fraction estimation for oncological PET segmentation 6 Mar 202424 Oct 2025 Task: Semi-automated tissue-fraction estimation-based lesion segmentation from human PET images for quantitative assessments of oncologic diseases. Description: The proposed model implements a novel Bayesian approach to tissue-fraction estimation (TFE) for oncological…
AI-outcome prediction… nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation 7 Feb 202424 Oct 2025 nnU-Net (v2) is a deep learning-based segmentation method that automatically configures itself, including preprocessing, network architecture, training and post-processing for any new task in the biomedical domain. The key design…
AI-NeuroImaging… DaT-SPECT-Segmentation: A tissue-fraction estimation-based segmentation framework for quantitative dopamine transporter SPECT 5 Feb 202424 Oct 2025 Task: Fully automated tissue-fraction estimation-based segmentation of the caudate, putamen, and Globus Pallidus (GP) from human brain DaT-SPECT images for quantitative assessments of Parkinson's Disease. Description: The DaT-SPECT-Segmentation model estimates the…
AI-segmentation… MOOSE 27 Dec 202324 Oct 2025 Multi-organ objective segmentation MOOSE (Multi-organ objective segmentation) is a data-centric AI solution designed to streamline systemic Total-Body research by generating multilabel organ segmentations with high precision. Built on the robust…
free (w/ or w/o commercial version)… Magia 30 Oct 202330 Oct 2023 Automated Brain PET Analysis Pipeline Magia is an automated processing pipeline for brain PET studies. Magia uses FreeSurfer to parcellate the brain into anatomical regions of interest, and performs kinetic…
free (w/ or w/o commercial version)… STARE 29 Oct 202331 Oct 2023 Source-to-Target Automatic Rotating Estimation STARE, Source-to-Target Automatic Rotating Estimation, is a MATLAB package for non-invasive estimation of the net influx rate (Ki) of irreversible Positron Emission Tomography (PET) radiotracers and…
free (w/ or w/o commercial version)… TriDFusion (3DF) image viewer 22 Mar 202327 Mar 2023 The TriDFusion (3DF) Image Viewer is a MATLABTM-based Multi-Fusion Imaging research software tool designed for physicians, physicist and academic researchers in medical imaging. It is a Multi-Modality & Multidimensional DICOM Image…
free (w/ or w/o commercial version)… RT-UTILS: A minimal Python library for RT Struct manipulation 22 Mar 202327 Mar 2023 RT-Utils has been developed to allow physicians and other users to view the results of segmentation performed on a series of DICOM images. It allows you to create or load…
free (w/ or w/o commercial version)… NAPARI 28 Feb 20221 Mar 2022 Multi-dimensional image viewer for python napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing large multi-dimensional images. It’s built on top of Qt (for the…
commercial-only… QUAD (Cedars Sinai Quantitative Diagnostic Software Group) 17 Feb 202217 Feb 2022 The Quantitative Diagnostic Software Group (QUAD) of the Department of Medicine at Cedars-Sinai, USA, seeks to develop software to allow computers to process and analyze three-dimensional images of the heart in…
free (w/ or w/o commercial version)… FIREVOXEL 1 Mar 20213 Jul 2023 FireVoxel is a medical imaging software for analysis and display of medical images. The emphasis is on fitting the kinetic models to the dynamic MRI, CT, PET, and SPECT acquisitions. Also…
free (w/ or w/o commercial version)… itk-SNAP 15 Jun 202012 Aug 2020 ITK-SNAP is a software application used to segment structures in 3D medical images. It is an interactive software application that allows users to navigate three-dimensional medical images, manually delineate anatomical…
free (w/ or w/o commercial version)… ITK: The Insight Toolkit 15 Jun 202012 Aug 2020 Insight Toolkit (ITK), also known as Insight Segmentation and Registration Toolkit, is an open-source, cross-platform library that provides developers with an extensive suite of software tools for image analysis. Developed…
commercial-only… PMOD 1 Jan 201912 Aug 2020 Description: PMOD consists of a comprehensive set of user-friendly and powerful tools, each corresponding to a major task involved in image quantification. Due to their smooth interaction, the tools form…
commercial-only… MIM Software 1 Jan 201912 Aug 2020 MIM Software Inc. provides practical imaging solutions in the fields of radiation oncology, radiology, nuclear medicine, neuroimaging, and cardiac imaging. MIM offers solutions for PC and Mac® workstations, as well…
commercial-only… Hermes Medical Solutions Software 1 Jan 201921 Mar 2023 Hermes Medical Solutions continuously innovates to enable faster and more personalized diagnosis and therapies in molecular imaging and nuclear medicine. For 47 years, we have empowered physicians and healthcare professionals…
commercial-only… CVIT (Cardiovascular Imaging Technologies) 1 Jan 201912 Aug 2020 Cardiovascular Imaging Technologies (CVIT) is a provider of cardiac specific research and technology solutions. CVIT offers a suite of software products for quantitative image reconstruction, review, analysis and kinetic modeling.…
free (w/ or w/o commercial version)… 3DSlicer 1 Jan 201912 Aug 2020 3DSlicer is an open source software platform for medical image informatics, image processing, and three-dimensional visualization. Built over two decades through support from the National Institutes of Health and a…
free (w/ or w/o commercial version)… FreeSurfer 1 Jan 201918 Oct 2023 FreeSurfer is an open-source software suite for processing and analyzing (human) brain MRI images. It can support Skullstripping, Image Registration, Subcortical Segmentation, Cortical Surface Reconstruction, Cortical Segmentation, Cortical Thickness Estimation,…
commercial-only… MedView 1 Jan 201912 Aug 2020 MedView from MedImage is an imaging exam reading software for nuclear medicine, nuclear cardiology and PET/CT. MedView can be used as a stand-alone solution or integrated with PACS. Single station or…
free (w/ or w/o commercial version)… Carimas 1 Jan 201912 Aug 2020 Carimas is a general medical imaging processing platform developed in Turku PET Centre in Finland. Carimas is for research use only – not for use in diagnostic procedure. Originally, Carimas…
free (w/ or w/o commercial version)… SPM – Statistical Parametric mapping 1 Jan 201912 Aug 2020 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional imaging data. These ideas have been instantiated in software…
commercial-only… VivoQuant 1 Jan 201912 Aug 2020 VivoQuant® from Invicro is a DICOM compliant post-processing suite for image data combining fundamental viewing functionality with advanced analysis capabilities. VivoQuant® supports data from most imaging modalities including MR, PET, SPECT, CT,…
free (w/ or w/o commercial version)… QIICR (Quantitative Image Informatics for Cancer Research) 1 Jan 201912 Aug 2020 QIICR: open source imaging informatics tools based on 3D Slicer to support research workflows of the NCI Quantitative Imaging Network.QIICR is supported by the NIH National Cancer Institute ITCR program,…
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