AI-segmentation… SEQUOIA 8 Dec 202424 Oct 2025 automated multiclass SEgmentation, QUantification, and visualizatiOn of the dIseased Aorta on hybrid PET/CT SEQUOIA is an automated pipeline for aortic PET/CT studies. First, it segments the ascending aorta, aortic arch,…
AI-PET denoising… Parameter-Transferred Wasserstein Generative Adversarial Network (PT-WGAN) for Low-Dose PET Image Denoising 12 Nov 202424 Oct 2025 Task: Low-dose PET image denoising via a GAN method Description: A hybrid 2D and 3D parameter-transferred Wasserstein GAN PT-WGAN model for low-dose PET image denoising. The model's performance is a…
AI-PET attenuation… Whole Body PET Attenuation Correction Map Synthesizing using 3D Deep Networks 8 Oct 202424 Oct 2025 Task: Whole body attenuation map generation using 3D U-Net generative adversarial networks (GANs) Description: The model is initially trained as a 3D U-Net to learn the mapping from non attenuation…
AI-outcome prediction… nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation 7 Feb 202424 Oct 2025 nnU-Net (v2) is a deep learning-based segmentation method that automatically configures itself, including preprocessing, network architecture, training and post-processing for any new task in the biomedical domain. The key design…
AI-pulses discrimination… DMLLT Detector Pulse Discriminator – A supervised machine learning approach for shape-sensitive detector pulse discrimination in positron annihilation lifetime spectroscopy (PALS) applications 10 Jan 202424 Oct 2025 Task: Detector pulse discrimination in positron annihilation lifetime spectroscopy (PALS) Description: A supervised machine learning (ML) model based on a naive Bayes classification model using a normally distributed likelihood as…
free (w/ or w/o commercial version)… Bloodstream 31 Oct 2023 A PET BIDS blood-processing tool Bloodstream is a simplified and automated pipeline designed for PET studies to process blood data [1,2] in BIDS (Brain Imaging Data Structure) format [3]. The bloodstream package…
free (w/ or w/o commercial version)… FALCON 25 Oct 202325 Oct 2023 Fast Algorithms for Motion Correction FALCON is a Python-based advanced, fully-automatic PET image registration and motion correction tool designed to facilitate PET motion correction, both for head and total-body scans.…
free (w/ or w/o commercial version)… Open KM Initiative 7 Aug 202227 Mar 2023 The Open Kinetic Modeling (OpenKM) Initiative is aimed at opening up more educational opportunities and research resources on tracer kinetic modeling in the technical community of molecular imaging. The OpenKM…
free (w/ or w/o commercial version)… imlook4d 8 Mar 202227 Mar 2023 Imlook4d is a software tool for visualization of medical images (2D), volumes (3D) and time-dependent volumes (4D). Imlook4d is written in Matlab, which means that it has to be installed…
free (w/ or w/o commercial version)… SAKE 3 Mar 20223 Mar 2022 Spectral Analysis Kinetic Estimation (SAKE): an integrated tool for quantification of PET data. SAKE is an open-source software designed for the easy application of spectral analysis in PET kinetic modeling…
free (w/ or w/o commercial version)… NAPARI 28 Feb 20221 Mar 2022 Multi-dimensional image viewer for python napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing large multi-dimensional images. It’s built on top of Qt (for the…
commercial-only… QUAD (Cedars Sinai Quantitative Diagnostic Software Group) 17 Feb 202217 Feb 2022 The Quantitative Diagnostic Software Group (QUAD) of the Department of Medicine at Cedars-Sinai, USA, seeks to develop software to allow computers to process and analyze three-dimensional images of the heart in…
free (w/ or w/o commercial version)… IAEA-NMQC 24 Aug 202024 Aug 2020 The IAEA Nuclear Medicine Quality Control (NMQC) Toolkit is a set of ImageJ (Fiji edition)-based codes developed in Java v.1.8 that allow the processing and analysis of nuclear medicine images…
free (w/ or w/o commercial version)… Mango: Multi-image Analysis GUI 15 Jun 202021 Aug 2020 Mango – short for Multi-image Analysis GUI – is a viewer for medical research images. It provides analysis tools and a user interface to navigate image volumes. Versions There are…
free (w/ or w/o commercial version)… ITK: The Insight Toolkit 15 Jun 202012 Aug 2020 Insight Toolkit (ITK), also known as Insight Segmentation and Registration Toolkit, is an open-source, cross-platform library that provides developers with an extensive suite of software tools for image analysis. Developed…
free (w/ or w/o commercial version)… STIR (Software for Tomographic Image Reconstruction) 1 Jan 201912 Aug 2020 Description: STIR is an Open Source software for use in tomographic imaging. Its aim is to provide a Multi-Platform Object-Oriented framework for all data manipulations and corrections in tomographic imaging.…
free (w/ or w/o commercial version)… TERSE (transmission and emission reconstruction environment for SPECT) 1 Jan 201912 Aug 2020 TERSE: a transmission and emission reconstruction environment for SPECT, has been developed at the University of Michigan by Jeff Fessler and Edward Ficaro, in a collaboration between the Department of…
free (w/ or w/o commercial version)… PET-RD-tools 1 Jan 201912 Aug 2020 PET-RD-tools is a collection of command line utilities for PET-MR (pre)-processing. The tools have been designed for validating and extracting raw PET data, and associated files, for the purposes of…
free (w/ or w/o commercial version)… PETPVC: toolbox for partial volume correction in PET 1 Jan 201912 Aug 2020 PETPVC is a toolbox for partial volume correction (PVC) in positron emission tomography (PET). The package offers a method for applying partial volume correction (PVC) to positron emission tomography (PET)…
free (w/ or w/o commercial version)… KesnerDDG – Data-driven respiratory gating of PET list-mode data 1 Jan 201912 Aug 2020 KesnerDDG is research software that can be used for data driven respiratory motion correction in PET imaging. This software was built as a free tool to be available for researchers…
free (w/ or w/o commercial version)… NiftyPET 1 Jan 201912 Aug 2020 NiftyPET is an open source Python package for image reconstruction and analysis with uncertainty estimation as well as support for high-throughput parallel processing using GPU computing. The pipeline of the…
free (w/ or w/o commercial version)… SIRF (Synergistic Image Reconstruction Framework) for Biomedical Imaging 1 Jan 201912 Aug 2020 The CCP (Collaborative Computational Project) in synergistic image reconstruction for biomedical imaging (SyneRBI), formerly known as CCP PET-MR (Collaborative Computational Project in synergistic PET-MR image reconstruction), project has led to…
NMMItools 